5MY9 Transferase date Jan 26, 2017
title Crystal Structure Of Human 14-3-3 Sigma In Complex With Lrrk Ps935
authors L.M.Stevers, R.M.J.M.De Vries, C.Ottmann
compound source
Molecule: 14-3-3 Protein Sigma
Chain: A
Synonym: Epithelial Cell Marker Protein 1,Stratifin
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sfn, Hme1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Leucine-Rich Repeat Serinethreonine-Protein Kina
Chain: P
Fragment: Unp Residues 929-941
Synonym: Dardarin
Ec: 2.7.11.1
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.187 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
82.291 112.030 62.430 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.33 Å
ligand CA, CL, SEP enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A
  • protein kinase C inhibitor a...
  • positive regulation of prote...

  • Primary referenceStructural interface between LRRK2 and 14-3-3 protein., Stevers L, de Vries R, Doveston R, Milroy LG, Brunsveld L, Ottmann C, Biochem J. 2017 Feb 15. pii: BCJ20161078. doi: 10.1042/BCJ20161078. PMID:28202711
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5my9.pdb1.gz) 96 Kb
  • LPC: Ligand-Protein Contacts for 5MY9
  • CSU: Contacts of Structural Units for 5MY9
  • Structure Factors (1158 Kb)
  • Retrieve 5MY9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MY9 from S2C, [Save to disk]
  • Re-refined 5my9 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MY9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MY9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5my9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5my9] [5my9_P] [5my9_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MY9
  • Community annotation for 5MY9 at PDBWiki (http://pdbwiki.org)

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