5N8L Rna Binding Protein date Feb 23, 2017
title Structure Of Trbp Dsrbd 1 And 2 In Complex With A 19 Bp Sirn B)
authors G.Masliah, C.Maris, H.T.F.Allain
compound source
Molecule: Risc-Loading Complex Subunit Tarbp2
Chain: A
Synonym: Tar Rna-Binding Protein 2,Trans-Activation-Respons Binding Protein;
Engineered: Yes
Other_details: Hutrbp N-Terminal Dsrbd1 And 2 (Residues 16
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tarbp2, Trbp
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'- R(Upupapapupupapupcpupapupupcpcpgpupapcp 3');
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630

Molecule: Rna (5'- R(Gpupapcpgpgpapapupapgpapupapapupupapap 3');
Chain: C
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
methodSolution NMR

Primary referenceStructural basis of siRNA recognition by TRBP double-stranded RNA binding domains., Masliah G, Maris C, Konig SL, Yulikov M, Aeschimann F, Malinowska AL, Mabille J, Weiler J, Holla A, Hunziker J, Meisner-Kober N, Schuler B, Jeschke G, Allain FH, EMBO J. 2018 Feb 15. pii: embj.201797089. doi: 10.15252/embj.201797089. PMID:29449323
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (1253 Kb) [Save to disk]
  • Biological Unit Coordinates (5n8l.pdb1.gz) 63 Kb
  • CSU: Contacts of Structural Units for 5N8L
  • Original NMR restraints for 5N8L from PDB
  • Retrieve 5N8L in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5N8L from S2C, [Save to disk]
  • View 5N8L in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5N8L
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5n8l from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5n8l_C] [5n8l_B] [5n8l_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5N8L
  • Community annotation for 5N8L at PDBWiki (http://pdbwiki.org)

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