5NGV Transferase date Mar 20, 2017
title Crystal Structure Of The Activin Receptor Type-2b Ligand Bin Domain In Complex With Bimagrumab Fv, Orthorhombic Crystal
authors J.M.Rondeau, S.Lehmann
compound source
Molecule: Activin Receptor Type-2b
Chain: A
Fragment: Ligand Binding Domain
Synonym: Activin Receptor Type Iib,Actr-Iib
Ec: 2.7.11.30
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acvr2b
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: Shuffle
Expression_system_vector_type: Plasmid

Molecule: Anti-Human Actriib Mab Bym338 Heavy-Chain
Chain: H
Fragment: Vh
Engineered: Yes
Other_details: C-Terminal His6-Tag

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: W3110
Expression_system_vector_type: Plasmid

Molecule: Anti-Human Actriib Mab Bym338 Light-Chain
Chain: L
Fragment: Vl
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_variant: W3110
Expression_system_vector_type: Plasmid
symmetry Space Group: I 2 2 2
R_factor 0.177 R_Free 0.198
crystal
cell
length a length b length c angle alpha angle beta angle gamma
62.100 114.170 117.940 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand PCA, PG4 enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceBlockade of activin type II receptors with a dual anti-ActRIIA/IIB antibody is critical to promote maximal skeletal muscle hypertrophy., Morvan F, Rondeau JM, Zou C, Minetti G, Scheufler C, Scharenberg M, Jacobi C, Brebbia P, Ritter V, Toussaint G, Koelbing C, Leber X, Schilb A, Witte F, Lehmann S, Koch E, Geisse S, Glass DJ, Lach-Trifilieff E, Proc Natl Acad Sci U S A. 2017 Nov 6. pii: 201707925. doi:, 10.1073/pnas.1707925114. PMID:29109273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (113 Kb) [Save to disk]
  • Biological Unit Coordinates (5ngv.pdb1.gz) 108 Kb
  • LPC: Ligand-Protein Contacts for 5NGV
  • CSU: Contacts of Structural Units for 5NGV
  • Structure Factors (267 Kb)
  • Retrieve 5NGV in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NGV from S2C, [Save to disk]
  • View 5NGV in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NGV
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ngv from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ngv_H] [5ngv_A] [5ngv_L]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NGV
  • Community annotation for 5NGV at PDBWiki (http://pdbwiki.org)

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