5NHR Immune System date Mar 22, 2017
title Crystal Structure Of The Activin Receptor Type-2b Ligand Bin Domain In Complex With Bimagrumab Fv, Cubic Crystal Form
authors J.M.Rondeau
compound source
Molecule: Bimagrumab Fv Light-Chain
Chain: L, B
Fragment: Ligand Binding Domain
Engineered: Yes
Other_details: Vl Domain
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Str. K-12 Substr. W3110
Expression_system_taxid: 316407
Expression_system_vector_type: Plasmid

Molecule: Bimagrumab Fv Heavy-Chain
Chain: H, A
Fragment: Vh
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Str. K-12 Substr. W3110
Expression_system_taxid: 316407
Expression_system_vector_type: Plasmid

Molecule: Activin Receptor Type-2b
Chain: C, D
Fragment: Vl, Unp Residues 24-117
Synonym: Activin Receptor Type Iib,Actr-Iib
Ec: 2.7.11.30
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acvr2b
Expression_system: Escherichia Coli K-12
Expression_system_taxid: 83333
Expression_system_variant: Shuffle
Expression_system_vector_type: Plasmid
symmetry Space Group: P 2 3
R_factor 0.216 R_Free 0.229
crystal
cell
length a length b length c angle alpha angle beta angle gamma
187.826 187.826 187.826 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.35 Å
ligand
enzyme Transferase E.C.2.7.11.30 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
D, C


Primary referenceBlockade of activin type II receptors with a dual anti-ActRIIA/IIB antibody is critical to promote maximal skeletal muscle hypertrophy., Morvan F, Rondeau JM, Zou C, Minetti G, Scheufler C, Scharenberg M, Jacobi C, Brebbia P, Ritter V, Toussaint G, Koelbing C, Leber X, Schilb A, Witte F, Lehmann S, Koch E, Geisse S, Glass DJ, Lach-Trifilieff E, Proc Natl Acad Sci U S A. 2017 Nov 6. pii: 201707925. doi:, 10.1073/pnas.1707925114. PMID:29109273
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (105 Kb) [Save to disk]
  • Biological Unit Coordinates (5nhr.pdb1.gz) 51 Kb
  • Biological Unit Coordinates (5nhr.pdb2.gz) 52 Kb
  • CSU: Contacts of Structural Units for 5NHR
  • Structure Factors (288 Kb)
  • Retrieve 5NHR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NHR from S2C, [Save to disk]
  • View 5NHR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NHR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nhr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nhr_L] [5nhr_C] [5nhr_B] [5nhr_H] [5nhr_A] [5nhr_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NHR
  • Community annotation for 5NHR at PDBWiki (http://pdbwiki.org)

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