5NHR	Immune System	date	Mar 22, 2017
title	Crystal Structure Of The Activin Receptor Type-2b Ligand Bin Domain In Complex With Bimagrumab Fv, Cubic Crystal Form
authors	J.M.Rondeau
compound		source
Molecule: Bimagrumab Fv Light-Chain Chain: L, B Fragment: Ligand Binding Domain Engineered: Yes Other_details: Vl Domain		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Str. K-12 Substr. W3110 Expression_system_taxid: 316407 Expression_system_vector_type: Plasmid
Molecule: Bimagrumab Fv Heavy-Chain Chain: H, A Fragment: Vh Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Expression_system: Escherichia Coli Str. K-12 Substr. W3110 Expression_system_taxid: 316407 Expression_system_vector_type: Plasmid
Molecule: Activin Receptor Type-2b Chain: C, D Fragment: Vl, Unp Residues 24-117 Synonym: Activin Receptor Type Iib,Actr-Iib Ec: 2.7.11.30 Engineered: Yes		Organism_scientific: Homo Sapiens Organism_common: Human Organism_taxid: 9606 Gene: Acvr2b Expression_system: Escherichia Coli K-12 Expression_system_taxid: 83333 Expression_system_variant: Shuffle Expression_system_vector_type: Plasmid
symmetry	Space Group: P 2 3	R_factor 0.216 R_Free 0.229
crystal cell	length a length b length c angle alpha angle beta angle gamma 187.826 187.826 187.826 90.00 90.00 90.00
method	X-Ray Diffraction	resolution	3.35 Å
ligand		enzyme	Transferase E.C.2.7.11.30 BRENDA
Gene Ontology	Chain Function Process Component D, C
Primary reference	Blockade of activin type II receptors with a dual anti-ActRIIA/IIB antibody is critical to promote maximal skeletal muscle hypertrophy., Morvan F, Rondeau JM, Zou C, Minetti G, Scheufler C, Scharenberg M, Jacobi C, Brebbia P, Ritter V, Toussaint G, Koelbing C, Leber X, Schilb A, Witte F, Lehmann S, Koch E, Geisse S, Glass DJ, Lach-Trifilieff E, Proc Natl Acad Sci U S A. 2017 Nov 6. pii: 201707925. doi:, 10.1073/pnas.1707925114. PMID:29109273

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (104 Kb) [Save to disk] Biological Unit Coordinates (5nhr.pdb1.gz) 50 Kb Biological Unit Coordinates (5nhr.pdb2.gz) 51 Kb CSU: Contacts of Structural Units for 5NHR Structure Factors (288 Kb) Retrieve 5NHR in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5NHR from S2C, [Save to disk]

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Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Visual 3D analysis of 5NHR

Ramachandran plot from PDBSum

Structure-derived information

Electron Density related parameters from EDS Electron Density Server, at Upsala Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5nhr_L] [5nhr_C] [5nhr_B] [5nhr_H] [5nhr_A] [5nhr_D] SWISS-PROT database: Domain organization of by SWISSPFAM

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