5NN5 Hydrolase date Apr 08, 2017
title Crystal Structure Of Human Lysosomal Acid-Alpha-Glucosidase, Complex With 1-Deoxynojirimycin
authors V.Roig-Zamboni, B.Cobucci-Ponzano, R.Iacono, M.C.Ferrara, S.Germ G.Parenti, Y.Bourne, M.Moracci
compound source
Molecule: Lysosomal Alpha-Glucosidase
Chain: A
Synonym: Acid Maltase,Aglucosidase Alfa
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Gaa
Expression_system: Cricetulus Griseus
Expression_system_taxid: 10029
Expression_system_cell: Ovary Cells
symmetry Space Group: P 21 21 21
R_factor 0.183 R_Free 0.218
length a length b length c angle alpha angle beta angle gamma
97.486 102.972 129.028 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand BMA, CL, CSO, EDO, FUC, MAN, NAG, NOJ, SO4 enzyme Hydrolase E.C. BRENDA
  • alpha-1,4-glucosidase activi...

  • Primary referenceStructure of human lysosomal acid alpha-glucosidase-a guide for the treatment of Pompe disease., Roig-Zamboni V, Cobucci-Ponzano B, Iacono R, Ferrara MC, Germany S, Bourne Y, Parenti G, Moracci M, Sulzenbacher G, Nat Commun. 2017 Oct 24;8(1):1111. doi: 10.1038/s41467-017-01263-3. PMID:29061980
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (287 Kb) [Save to disk]
  • Biological Unit Coordinates (5nn5.pdb1.gz) 279 Kb
  • LPC: Ligand-Protein Contacts for 5NN5
  • CSU: Contacts of Structural Units for 5NN5
  • Structure Factors (2890 Kb)
  • Retrieve 5NN5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NN5 from S2C, [Save to disk]
  • View 5NN5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NN5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nn5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nn5_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NN5
  • Community annotation for 5NN5 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science