5NX1 Hydrolase date May 09, 2017
title Combinatorial Engineering Of Proteolytically Resistant Appi That Selectively Inhibit Human Kallikrein 6 For Cancer Ther
authors A.Shahar, A.Sananes, E.S.Radisky, N.Papo
compound source
Molecule: Kallikrein-6
Chain: A
Synonym: Neurosin,Protease M,Sp59,Serine Protease 18,Serine 9,Zyme;
Ec: 3.4.21.-
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Klk6, Prss18, Prss9
Expression_system: Trichoplusia Ni
Expression_system_common: Cabbage Looper
Expression_system_taxid: 7111
Expression_system_cell_line: High Five

Molecule: Amyloid-Beta A4 Protein
Chain: B
Fragment: Unp Residues 289-301
Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Am Precursor Protein,Amyloid-Beta Precursor Protein,Cerebral V Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Komagataella Phaffii Gs115
Expression_system_taxid: 644223

Molecule: Amyloid-Beta A4 Protein
Chain: D
Fragment: Unp Residues 302-346
Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Am Precursor Protein,Amyloid-Beta Precursor Protein,Cerebral V Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Komagataella Phaffii Gs115
Expression_system_taxid: 644223

Molecule: Amyloid-Beta A4 Protein
Chain: C
Fragment: Unp Residues 289-346
Synonym: Abpp,Appi,App,Alzheimer Disease Amyloid Protein,Am Precursor Protein,Amyloid-Beta Precursor Protein,Cerebral V Amyloid Peptide,Cvap,Prea4,Protease Nexin-II,Pn-II;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: App, A4, Ad1
Expression_system: Komagataella Phaffii Gs115
Expression_system_taxid: 644223
symmetry Space Group: P 21 21 21
R_factor 0.184 R_Free 0.226
crystal
cell
length a length b length c angle alpha angle beta angle gamma
59.543 77.702 92.207 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.85 Å
ligand
enzyme Hydrolase E.C.3.4.21 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


C


D


Primary referenceA potent, proteolysis-resistant inhibitor of kallikrein-related peptidase 6 (KLK6) for cancer therapy, developed by combinatorial engineering., Sananes A, Cohen I, Shahar A, Hockla A, De Vita E, Miller AK, Radisky ES, Papo N, J Biol Chem. 2018 Aug 17;293(33):12663-12680. doi: 10.1074/jbc.RA117.000871. Epub, 2018 Jun 22. PMID:29934309
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (121 Kb) [Save to disk]
  • Biological Unit Coordinates (5nx1.pdb1.gz) 113 Kb
  • CSU: Contacts of Structural Units for 5NX1
  • Structure Factors (990 Kb)
  • Retrieve 5NX1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5NX1 from S2C, [Save to disk]
  • View 5NX1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5NX1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5nx1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5nx1_D] [5nx1_B] [5nx1_C] [5nx1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5NX1
  • Community annotation for 5NX1 at PDBWiki (http://pdbwiki.org)

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