5OEC Hydrolase date Jul 07, 2017
title Human Rab32 (18-201):Gdp In Complex With Salmonella Gtge (21 Mutant
authors R.Wachtel, B.Braeuning, S.L.Mader, F.Ecker, V.R.I.Kaila, M.Groll,
compound source
Molecule: Gtge
Chain: A
Synonym: Virulence Protein
Engineered: Yes
Organism_scientific: Salmonella Choleraesuis
Organism_taxid: 28901
Gene: Gtge, In36_21720, In69_16745, In77_18825
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Ras-Related Protein Rab-32
Chain: B
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rab32
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
47.822 66.993 110.987 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.30 Å
ligand GDP, MG, MLY enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceThe protease GtgE from Salmonella exclusively targets inactive Rab GTPases., Wachtel R, Brauning B, Mader SL, Ecker F, Kaila VRI, Groll M, Itzen A, Nat Commun. 2018 Jan 3;9(1):44. doi: 10.1038/s41467-017-02110-1. PMID:29298974
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (133 Kb) [Save to disk]
  • Biological Unit Coordinates (5oec.pdb1.gz) 124 Kb
  • LPC: Ligand-Protein Contacts for 5OEC
  • CSU: Contacts of Structural Units for 5OEC
  • Structure Factors (131 Kb)
  • Retrieve 5OEC in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5OEC from S2C, [Save to disk]
  • View 5OEC in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5OEC
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5oec from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5oec_B] [5oec_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5OEC
  • Community annotation for 5OEC at PDBWiki (http://pdbwiki.org)

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