5TCX Cell Invasion date Sep 16, 2016
title Crystal Structure Of Human Tetraspanin Cd81
authors B.Zimmerman, B.J.Mcmillan, T.C.M.Seegar, A.C.Kruse, S.C.Blacklow
compound source
Molecule: Cd81 Antigen
Chain: A
Synonym: 26 Kda Cell Surface Protein Tapa-1,Target Of The Antiproliferative Antibody 1,Tetraspanin-28,Tspan-28;
Engineered: Yes
Mutation: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Cd81, Tapa1, Tspan28
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108
symmetry Space Group: C 1 2 1
R_factor 0.267 R_Free 0.294
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.430 73.510 70.350 90.00 125.11 90.00
method X-Ray Diffractionresolution 2.96 Å
ligand CLR, YCM enzyme
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceCrystal Structure of a Full-Length Human Tetraspanin Reveals a Cholesterol-Binding Pocket., Zimmerman B, Kelly B, McMillan BJ, Seegar TC, Dror RO, Kruse AC, Blacklow SC, Cell. 2016 Nov 3;167(4):1041-1051.e11. doi: 10.1016/j.cell.2016.09.056. Epub 2016, Oct 27. PMID:27881302
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (5tcx.pdb1.gz) 33 Kb
  • LPC: Ligand-Protein Contacts for 5TCX
  • CSU: Contacts of Structural Units for 5TCX
  • Structure Factors (74 Kb)
  • Retrieve 5TCX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TCX from S2C, [Save to disk]
  • Re-refined 5tcx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
    • View 5TCX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 5TCX
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tcx_A] [5tcx]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 5TCX
  • Community annotation for 5TCX at PDBWiki (http://pdbwiki.org)

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