5TDF Transferase date Sep 19, 2016
title Tev Cleaved Human Atp Citrate Lyase Bound To 4s Hydroxycitra
authors J.Hu, M.E.Fraser
compound source
Molecule: Atp-Citrate Synthase
Chain: A
Fragment: Unp Residues 1-425
Synonym: Atp-Citrate (Pro-S-)-Lyase,Acl,Citrate Cleavage En
Ec: 2.3.3.8
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acly
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Atp-Citrate Synthase
Chain: B
Fragment: Unp Residues 488-810
Synonym: Atp-Citrate (Pro-S-)-Lyase,Acl,Citrate Cleavage En
Ec: 2.3.3.8
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Acly
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.150 R_Free 0.191
crystal
cell
length a length b length c angle alpha angle beta angle gamma
55.050 83.870 195.740 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.80 Å
ligand 7A3, ADE, ADP, GOL, MG, NEP enzyme Transferase E.C.2.3.3.8 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceBinding of hydroxycitrate to human ATP-citrate lyase., Hu J, Komakula A, Fraser ME, Acta Crystallogr D Struct Biol. 2017 Aug 1;73(Pt 8):660-671. doi:, 10.1107/S2059798317009871. Epub 2017 Jul 28. PMID:28777081
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (255 Kb) [Save to disk]
  • Biological Unit Coordinates (5tdf.pdb1.gz) 248 Kb
  • LPC: Ligand-Protein Contacts for 5TDF
  • CSU: Contacts of Structural Units for 5TDF
  • Structure Factors (5419 Kb)
  • Retrieve 5TDF in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5TDF from S2C, [Save to disk]
  • View 5TDF in 3D
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  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
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  • Visual 3D analysis of 5TDF
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5tdf from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5tdf_B] [5tdf_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5TDF
  • Community annotation for 5TDF at PDBWiki (http://pdbwiki.org)

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