5UAU Oxidoreductase date Dec 20, 2016
title Structure Of Human Pycr-1 Complexed With Proline
authors J.J.Tanner
compound source
Molecule: Pyrroline-5-Carboxylate Reductase 1, Mitochondria
Chain: A, B, C, D, E
Fragment: Residues 1-300
Synonym: P5cr 1
Ec: 1.5.1.2
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pycr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.196 R_Free 0.228
crystal
cell
length a length b length c angle alpha angle beta angle gamma
165.130 87.750 117.130 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.90 Å
ligand PRO, SO4 enzyme Oxidoreductase E.C.1.5.1.2 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, E, B


Primary referenceResolving the Cofactor Binding Site in the Proline Biosynthetic Enzyme Human Pyrroline-5-Carboxylate Reductase 1., Christensen EM, Patel SM, Korasick DA, Campbell AC, Krause KL, Becker DF, Tanner JJ, J Biol Chem. 2017 Mar 3. pii: jbc.M117.780288. doi: 10.1074/jbc.M117.780288. PMID:28258219
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (424 Kb) [Save to disk]
  • Biological Unit Coordinates (5uau.pdb1.gz) 826 Kb
  • Biological Unit Coordinates (5uau.pdb2.gz) 170 Kb
  • Biological Unit Coordinates (5uau.pdb3.gz) 170 Kb
  • Biological Unit Coordinates (5uau.pdb4.gz) 163 Kb
  • LPC: Ligand-Protein Contacts for 5UAU
  • CSU: Contacts of Structural Units for 5UAU
  • Structure Factors (976 Kb)
  • Retrieve 5UAU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UAU from S2C, [Save to disk]
  • Re-refined 5uau structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UAU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UAU
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uau from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uau_D] [5uau] [5uau_A] [5uau_E] [5uau_B] [5uau_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UAU
  • Community annotation for 5UAU at PDBWiki (http://pdbwiki.org)

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