5UQ9 Oxidoreductase date Feb 07, 2017
title Crystal Structure Of 6-Phosphogluconate Dehydrogenase With ( (Hydroxycarbamoyl)-2,2-Dimethyl-1,3-Dioxolan-4-Yl)Methyl Di Phosphate
authors P.G.Leonard
compound source
Molecule: 6-Phosphogluconate Dehydrogenase, Decarboxylating
Chain: A, B, C, D, E, F, G, H
Ec: 1.1.1.44
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pgd, Pgdh
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.217 R_Free 0.272
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.311 164.930 133.199 90.00 91.43 90.00
method X-Ray Diffractionresolution 3.00 Å
ligand 8HS enzyme Oxidoreductase E.C.1.1.1.44 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
F, A, E, B, H, C, D, G


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (596 Kb) [Save to disk]
  • Biological Unit Coordinates (5uq9.pdb1.gz) 153 Kb
  • Biological Unit Coordinates (5uq9.pdb2.gz) 153 Kb
  • Biological Unit Coordinates (5uq9.pdb3.gz) 153 Kb
  • Biological Unit Coordinates (5uq9.pdb4.gz) 152 Kb
  • LPC: Ligand-Protein Contacts for 5UQ9
  • CSU: Contacts of Structural Units for 5UQ9
  • Structure Factors (3788 Kb)
  • Retrieve 5UQ9 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UQ9 from S2C, [Save to disk]
  • View 5UQ9 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UQ9
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uq9 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uq9_G] [5uq9_B] [5uq9_E] [5uq9_H] [5uq9_A] [5uq9_D] [5uq9_C] [5uq9_F]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UQ9
  • Community annotation for 5UQ9 at PDBWiki (http://pdbwiki.org)

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