5UU1 Transferase Transferase Inhibitor date Feb 15, 2017
title Crystal Structure Of Human Vaccinia-Related Kinase 2 (Vrk-2) Bi-D1870
authors R.M.Counago, C.Bountra, P.Arruda, A.M.Edwards, O.Gileadi, Structu Genomics Consortium (Sgc)
compound source
Molecule: Serinethreonine-Protein Kinase Vrk2
Chain: A
Fragment: Unp Residues 14-335
Synonym: Vaccinia-Related Kinase 2
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Vrk2
Expression_system: Escherichia Coli
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_variant: R3
symmetry Space Group: P 21 21 21
R_factor 0.182 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
54.477 72.683 83.042 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 7DZ enzyme Transferase E.C.2.7.11.1 BRENDA
note 5UU1 supersedes 5TKX
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructural characterization of human Vaccinia-Related Kinases (VRK) bound to small-molecule inhibitors identifies different P-loop conformations., Counago RM, Allerston CK, Savitsky P, Azevedo H, Godoi PH, Wells CI, Mascarello A, de Souza Gama FH, Massirer KB, Zuercher WJ, Guimaraes CRW, Gileadi O, Sci Rep. 2017 Aug 8;7(1):7501. doi: 10.1038/s41598-017-07755-y. PMID:28790404
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (108 Kb) [Save to disk]
  • Biological Unit Coordinates (5uu1.pdb1.gz) 104 Kb
  • LPC: Ligand-Protein Contacts for 5UU1
  • CSU: Contacts of Structural Units for 5UU1
  • Structure Factors (747 Kb)
  • Retrieve 5UU1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5UU1 from S2C, [Save to disk]
  • Re-refined 5uu1 structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5UU1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5UU1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5uu1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5uu1] [5uu1_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5UU1
  • Community annotation for 5UU1 at PDBWiki (http://pdbwiki.org)

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