5V1B Oxidoreductase Inhibitor date Mar 01, 2017
title Structure Of Phd1 In Complex With 1,2,4-Triazolo-[1,5-A]Pyri
authors R.J.Skene
compound source
Molecule: Egl Nine Homolog 2
Chain: A
Fragment: Unp Residues 167-403
Synonym: Estrogen-Induced Tag 6,Hph-3,Hypoxia-Inducible Fac Hydroxylase 1,Hph-1,Prolyl Hydroxylase Domain-Containing Pr Phd1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Egln2, Eit6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.189 R_Free 0.236
length a length b length c angle alpha angle beta angle gamma
66.717 112.082 66.223 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.49 Å
ligand 8UY, FE, SO4 enzyme Oxidoreductase E.C. BRENDA

Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (85 Kb) [Save to disk]
  • Biological Unit Coordinates (5v1b.pdb1.gz) 80 Kb
  • LPC: Ligand-Protein Contacts for 5V1B
  • CSU: Contacts of Structural Units for 5V1B
  • Structure Factors (248 Kb)
  • Retrieve 5V1B in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5V1B from S2C, [Save to disk]
  • Re-refined 5v1b structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5V1B in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5V1B
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5v1b from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5v1b_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5V1B
  • Community annotation for 5V1B at PDBWiki (http://pdbwiki.org)

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