OCA Atlas for 5VND

5VND

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

9ES, EDO, SO4

enzyme

Gene
Ontology

Chain	Function	Process	Component
A, B

Primary reference

H3B-6527 Is a Potent and Selective Inhibitor of FGFR4 in FGF19-Driven Hepatocellular Carcinoma., Joshi JJ, Coffey H, Corcoran E, Tsai J, Huang CL, Ichikawa K, Prajapati S, Hao MH, Bailey S, Wu J, Rimkunas V, Karr C, Subramanian V, Kumar P, MacKenzie C, Hurley R, Satoh T, Yu K, Park E, Rioux N, Kim A, Lai WG, Yu L, Zhu P, Buonamici S, Larsen N, Fekkes P, Wang J, Warmuth M, Reynolds DJ, Smith PG, Selvaraj A, Cancer Res. 2017 Dec 15;77(24):6999-7013. doi: 10.1158/0008-5472.CAN-17-1865. PMID:29247039

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (109 Kb) [Save to disk]

Biological Unit Coordinates (5vnd.pdb1.gz) 54 Kb

Biological Unit Coordinates (5vnd.pdb2.gz) 52 Kb

Biological Unit Coordinates (5vnd.pdb3.gz) 103 Kb

LPC: Ligand-Protein Contacts for 5VND

CSU: Contacts of Structural Units for 5VND

Structure Factors (704 Kb)

Retrieve 5VND in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 5VND from S2C, [Save to disk]

Re-refined 5vnd structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models

View 5VND in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5vnd] [5vnd_A] [5vnd_B]

SWISS-PROT database:

Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]