5VY3 date
compound source
length a length b length c angle alpha angle beta angle gamma
method X-Ray Diffractionresolution
R, T, B, L, F, 1, H, P, Z, J, V, N, X, D

W, I, G, M, K, E, U, 0, Y, A, S, O, C, Q

Primary referenceAchieving better-than-3-A resolution by single-particle cryo-EM at 200 keV., Herzik MA Jr, Wu M, Lander GC, Nat Methods. 2017 Oct 9. doi: 10.1038/nmeth.4461. PMID:28991891
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (8045 Kb) [Save to disk]
  • Biological Unit Coordinates (5vy3.pdb1.gz) 812 Kb
  • CSU: Contacts of Structural Units for 5VY3
  • Retrieve 5VY3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5VY3 from S2C, [Save to disk]
  • View 5VY3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5vy3_0] [5vy3_1] [5vy3_A] [5vy3_B] [5vy3_C] [5vy3_D] [5vy3_E] [5vy3_F] [5vy3_G] [5vy3_H] [5vy3_I] [5vy3_J] [5vy3_K] [5vy3_L] [5vy3_M] [5vy3_N] [5vy3_O] [5vy3_P] [5vy3_Q] [5vy3_R] [5vy3_S] [5vy3_T] [5vy3_U] [5vy3_V] [5vy3_W] [5vy3_X] [5vy3_Y] [5vy3_Z]
  • SWISS-PROT database:

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