5W69 Immune System date Jun 16, 2017
title Hla-C06:02 Presenting Arfndlrfv
authors J.I.Mobbs, J.P.Vivian, J.Rossjohn
compound source
Molecule: Hla Class I Histocompatibility Antigen, Cw-6 Alph
Chain: A, C, E, G
Synonym: Mhc Class I Antigen Cw6
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hla-C, Hlac
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Beta-2-Microglobulin
Chain: B, D, F, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: B2m, Cdabp0092, Hdcma22p
Expression_system: Escherichia Coli
Expression_system_taxid: 511693
Expression_system_strain: Bl21
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet30

Molecule: Ala-Arg-Phe-Asn-Asp-Leu-Arg-Phe-Val
Chain: I, J, K, L
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: P 21 21 21
R_factor 0.164 R_Free 0.223
crystal
cell
length a length b length c angle alpha angle beta angle gamma
51.182 182.137 222.736 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.80 Å
Gene
Ontology
ChainFunctionProcessComponent
F, B, H, D
  • cellular response to iron io...

  • J, K, I, L


    Primary referenceThe molecular basis for peptide repertoire selection in the Human Leucocyte Antigen (HLA) C*06:02 molecule., Mobbs JI, Illing PT, Dudek NL, Brooks AG, Baker DG, Purcell AW, Rossjohn J, Vivian JP, J Biol Chem. 2017 Aug 30. pii: jbc.M117.806976. doi: 10.1074/jbc.M117.806976. PMID:28855257
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (544 Kb) [Save to disk]
  • Biological Unit Coordinates (5w69.pdb1.gz) 138 Kb
  • Biological Unit Coordinates (5w69.pdb2.gz) 138 Kb
  • Biological Unit Coordinates (5w69.pdb3.gz) 138 Kb
  • Biological Unit Coordinates (5w69.pdb4.gz) 136 Kb
  • CSU: Contacts of Structural Units for 5W69
  • Structure Factors (2290 Kb)
  • Retrieve 5W69 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W69 from S2C, [Save to disk]
  • View 5W69 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W69
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w69 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w69_I] [5w69_K] [5w69_L] [5w69_G] [5w69_H] [5w69_B] [5w69_F] [5w69_E] [5w69_C] [5w69_D] [5w69_J] [5w69_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W69
  • Community annotation for 5W69 at PDBWiki (http://pdbwiki.org)

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