5W6V Gene Regulation Rna date Jun 17, 2017
title The Structure Of Human Argonaute-1 In Complex With The Hook Human Gw182
authors E.Elkayam, C.R.Faehnle, L.Joshua-Tor
compound source
Molecule: Protein Argonaute-1
Chain: A
Synonym: Hago1, Argonaute Risc Catalytic Component 1, Eukar Translation Initiation Factor 2c 1, Eif2c 1, Rna-Binding Pr
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ago1, Eif2c1
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Rna (5'-R(Papapupapupupapapapa)-3')
Chain: R

Organism_scientific: Spodoptera Frugiperda
Organism_common: Fall Armyworm
Organism_taxid: 7108

Molecule: Trinucleotide Repeat-Containing Gene 6a Protein
Chain: B
Fragment: Hook Motif (Unp Residues 820-841)
Synonym: Cag Repeat Protein 26, Emsy Interactor Protein, Gw Autoantigen, Protein Gw1, Glycine-Tryptophan Protein Of 182
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Tnrc6a, Cagh26, Kiaa1460, Tnrc6
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 2
R_factor 0.200 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
93.750 136.861 86.054 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.83 Å
Gene
Ontology
ChainFunctionProcessComponent
A
  • core promoter sequence-speci...
  • endoribonuclease activity


  • Primary referenceMultivalent Recruitment of Human Argonaute by GW182., Elkayam E, Faehnle CR, Morales M, Sun J, Li H, Joshua-Tor L, Mol Cell. 2017 Aug 17;67(4):646-658.e3. doi: 10.1016/j.molcel.2017.07.007. Epub, 2017 Aug 3. PMID:28781232
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (291 Kb) [Save to disk]
  • Biological Unit Coordinates (5w6v.pdb1.gz) 285 Kb
  • CSU: Contacts of Structural Units for 5W6V
  • Structure Factors (428 Kb)
  • Retrieve 5W6V in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W6V from S2C, [Save to disk]
  • Re-refined 5w6v structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5W6V in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W6V
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w6v from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w6v_R] [5w6v_A] [5w6v_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W6V
  • Community annotation for 5W6V at PDBWiki (http://pdbwiki.org)

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