5W7J Protein Binding date Jun 20, 2017
title X-Ray Structure Of The E89a Variant Of Ankyrin Repeat Domain In Complex With Snap25b Peptide
authors R.Verardi, J.S.Kim, R.Ghirlando, A.Banerjee
compound source
Molecule: Palmitoyltransferase Zdhhc17
Chain: A, C
Synonym: Huntingtin Yeast Partner H,Huntingtin-Interacting 14,Hip-14,Huntingtin-Interacting Protein 3,Hip-3,Huntingtin Interacting Protein H,Putative Mapk-Activating Protein Pm11 Nf-Kappa-B-Activating Protein 205,Zinc Finger Dhhc Domain-C Protein 17,Dhhc-17;
Ec: 2.3.1.225
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Zdhhc17, Hip14, Hip3, Hyph, Kiaa0946, Hspc294
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Snap25b-111-120
Chain: B, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 64
R_factor 0.170 R_Free 0.211
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.736 87.736 128.007 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.20 Å
ligand
enzyme Transferase E.C.2.3.1.225 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, C


Primary referenceStructural Basis for Substrate Recognition by the Ankyrin Repeat Domain of Human DHHC17 Palmitoyltransferase., Verardi R, Kim JS, Ghirlando R, Banerjee A, Structure. 2017 Jul 18. pii: S0969-2126(17)30214-9. doi:, 10.1016/j.str.2017.06.018. PMID:28757145
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (80 Kb) [Save to disk]
  • Biological Unit Coordinates (5w7j.pdb1.gz) 39 Kb
  • Biological Unit Coordinates (5w7j.pdb2.gz) 39 Kb
  • CSU: Contacts of Structural Units for 5W7J
  • Structure Factors (711 Kb)
  • Retrieve 5W7J in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5W7J from S2C, [Save to disk]
  • View 5W7J in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5W7J
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5w7j from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5w7j_A] [5w7j_C] [5w7j_D] [5w7j_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5W7J
  • Community annotation for 5W7J at PDBWiki (http://pdbwiki.org)

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