5WAI Transcription date Jun 26, 2017
title Crystal Structure Of A Suz12-Rbbp4-Jarid2-Aebp2 Heterotetram Complex
authors S.Chen, L.Jiao, X.Liu
compound source
Molecule: Histone-Binding Protein Rbbp4
Chain: A, E
Synonym: Chromatin Assembly Factor 1 Subunit C,Caf-1 Subuni Chromatin Assembly Factor I P48 Subunit,Caf-I P48,Nucleosom Remodeling Factor Subunit Rbap48,Retinoblastoma-Binding Pro Rbbp-4,Retinoblastoma-Binding Protein P48;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp4, Rbap48
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Polycomb Protein Suz12
Chain: B, F
Fragment: Unp Residues 76-545
Synonym: Chromatin Precipitated E2f Target 9 Protein,Chet 9 Joined To Jazf1 Protein,Suppressor Of Zeste 12 Protein Homo
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Suz12, Chet9, Jjaz1, Kiaa0160
Expression_system: Spodoptera Frugiperda
Expression_system_taxid: 7108

Molecule: Zinc Finger Protein Aebp2
Chain: C, G
Fragment: Unp Residues 191-287
Synonym: Adipocyte Enhancer-Binding Protein 2,Ae-Binding Pr
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aebp2
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Jumonji, At-Rich Interactive Domain 2
Chain: D, H
Fragment: Unp Residues 39-57
Engineered: Yes

Synthetic: Yes
Organism_scientific: Neovison Vison
Organism_common: American Mink
Organism_taxid: 452646
symmetry Space Group: P 21 21 21
R_factor 0.171 R_Free 0.216
crystal
cell
length a length b length c angle alpha angle beta angle gamma
95.300 111.428 253.254 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.90 Å
ligand ZN enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, E


Primary referenceUnique Structural Platforms of Suz12 Dictate Distinct Classes of PRC2 for Chromatin Binding., Chen S, Jiao L, Shubbar M, Yang X, Liu X, Mol Cell. 2018 Mar 1;69(5):840-852.e5. doi: 10.1016/j.molcel.2018.01.039. PMID:29499137
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (560 Kb) [Save to disk]
  • Biological Unit Coordinates (5wai.pdb1.gz) 280 Kb
  • Biological Unit Coordinates (5wai.pdb2.gz) 275 Kb
  • LPC: Ligand-Protein Contacts for 5WAI
  • CSU: Contacts of Structural Units for 5WAI
  • Structure Factors (1314 Kb)
  • Retrieve 5WAI in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WAI from S2C, [Save to disk]
  • View 5WAI in 3D
  • Proteopedia, because life has more than 2D.
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  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WAI
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wai from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wai_C] [5wai_D] [5wai_F] [5wai_E] [5wai_B] [5wai_A] [5wai_H] [5wai_G]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WAI
  • Community annotation for 5WAI at PDBWiki (http://pdbwiki.org)

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