5WBL Protein Binding date Jun 29, 2017
title Crystal Structure Of The Arabidopsis Thaliana Raptor In Comp The Tos Peptide Of Human Pras40
authors N.P.Pavletich, X.Jiang
compound source
Molecule: Regulatory-Associated Protein Of Tor 1
Chain: A
Synonym: Protein Raptor 1,Protein Raptor 1b,Atraptor1b
Engineered: Yes
Organism_scientific: Arabidopsis Thaliana
Organism_common: Mouse-Ear Cress
Organism_taxid: 3702
Gene: Raptor1, Raptor1b, At3g08850, T16o11.22
Expression_system: Insect Cell Expression Vector Ptie1
Expression_system_taxid: 266783

Molecule: Proline-Rich Akt1 Substrate 1
Chain: T
Fragment: Residues 124-139
Synonym: 40 Kda Proline-Rich Akt Substrate
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 21 21 21
R_factor 0.205 R_Free 0.266
length a length b length c angle alpha angle beta angle gamma
89.100 113.100 151.800 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.35 Å

Primary referenceMechanisms of mTORC1 activation by RHEB and inhibition by PRAS40., Yang H, Jiang X, Li B, Yang HJ, Miller M, Yang A, Dhar A, Pavletich NP, Nature. 2017 Dec 13. pii: nature25023. doi: 10.1038/nature25023. PMID:29236692
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (367 Kb) [Save to disk]
  • Biological Unit Coordinates (5wbl.pdb1.gz) 359 Kb
  • CSU: Contacts of Structural Units for 5WBL
  • Structure Factors (217 Kb)
  • Retrieve 5WBL in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WBL from S2C, [Save to disk]
  • View 5WBL in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WBL
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wbl from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wbl_T] [5wbl_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WBL
  • Community annotation for 5WBL at PDBWiki (http://pdbwiki.org)

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