5WWG Rna Binding Protein Rna date Jan 01, 2017
title Crystal Structure Of Hnrnpa2b1 In Complex With Aaggacuugc
authors B.X.Wu, S.C.Su, J.B.Ma
compound source
Molecule: Heterogeneous Nuclear Ribonucleoproteins A2b1
Chain: A
Fragment: Rrms (Unp Residues 12-195)
Synonym: Hnrnp A2b1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Hnrnpa2b1, Hnrpa2b1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Rna (5'-R(Apapgpgpapcpupu)-3')
Chain: B
Engineered: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
symmetry Space Group: C 1 2 1
R_factor 0.199 R_Free 0.256
crystal
cell
length a length b length c angle alpha angle beta angle gamma
132.810 46.228 33.994 90.00 102.22 90.00
method X-Ray Diffractionresolution 2.03 Å
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceMolecular basis for the specific and multivariant recognitions of RNA substrates by human hnRNP A2/B1., Wu B, Su S, Patil DP, Liu H, Gan J, Jaffrey SR, Ma J, Nat Commun. 2018 Jan 29;9(1):420. doi: 10.1038/s41467-017-02770-z. PMID:29379020
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (5wwg.pdb1.gz) 35 Kb
  • CSU: Contacts of Structural Units for 5WWG
  • Structure Factors (363 Kb)
  • Retrieve 5WWG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WWG from S2C, [Save to disk]
  • View 5WWG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WWG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wwg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wwg_A] [5wwg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WWG
  • Community annotation for 5WWG at PDBWiki (http://pdbwiki.org)

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