5WXG Hydrolase date Jan 07, 2017
title Structure Of Taf Phd Finger Domain Binds To H3(1-15)K4ac
authors S.Zhao, H.Li
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 3
Chain: A
Fragment: Unp Residues 853-915
Synonym: 140 Kda Tata Box-Binding Protein-Associated Factor Associated Factor 3,Transcription Initiation Factor Tfiid 1 Subunit,Tafii140;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf3
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Histone H3k4ac
Chain: P
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: C 2 2 21
R_factor 0.167 R_Free 0.195
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.840 52.868 54.122 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand ALY, MG, ZN enzyme
Primary referenceKinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology., Zhao S, Yang M, Zhou W, Zhang B, Cheng Z, Huang J, Zhang M, Wang Z, Wang R, Chen Z, Zhu J, Li H, Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7245-E7254. doi:, 10.1073/pnas.1704155114. Epub 2017 Aug 14. PMID:28808021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (18 Kb) [Save to disk]
  • Biological Unit Coordinates (5wxg.pdb1.gz) 14 Kb
  • LPC: Ligand-Protein Contacts for 5WXG
  • CSU: Contacts of Structural Units for 5WXG
  • Structure Factors (115 Kb)
  • Retrieve 5WXG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WXG from S2C, [Save to disk]
  • View 5WXG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WXG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wxg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wxg_P] [5wxg_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WXG
  • Community annotation for 5WXG at PDBWiki (http://pdbwiki.org)

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