5WXH Hydrolase date Jan 07, 2017
title Crystal Structure Of Taf3 Phd Finger Bound To H3k4me3
authors S.Zhao, J.Huang, H.Li
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 3
Chain: A, C
Synonym: 140 Kda Tata Box-Binding Protein-Associated Factor Associated Factor 3,Transcription Initiation Factor Tfiid 1 Subunit,Tafii140;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psumoh10

Molecule: Histone H3k4me3
Chain: D, P
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Other_details: Chemically Synthesized H3k4me3 Peptide
symmetry Space Group: P 1
R_factor 0.153 R_Free 0.175
length a length b length c angle alpha angle beta angle gamma
27.244 35.138 38.562 82.96 75.62 73.49
method X-Ray Diffractionresolution 1.30 Å
ligand M3L, ZN enzyme
Primary referenceKinetic and high-throughput profiling of epigenetic interactions by 3D-carbene chip-based surface plasmon resonance imaging technology., Zhao S, Yang M, Zhou W, Zhang B, Cheng Z, Huang J, Zhang M, Wang Z, Wang R, Chen Z, Zhu J, Li H, Proc Natl Acad Sci U S A. 2017 Aug 29;114(35):E7245-E7254. doi:, 10.1073/pnas.1704155114. Epub 2017 Aug 14. PMID:28808021
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (56 Kb) [Save to disk]
  • Biological Unit Coordinates (5wxh.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (5wxh.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5WXH
  • CSU: Contacts of Structural Units for 5WXH
  • Structure Factors (403 Kb)
  • Retrieve 5WXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5WXH from S2C, [Save to disk]
  • View 5WXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5WXH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5wxh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5wxh_A] [5wxh_P] [5wxh_C] [5wxh_D]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5WXH
  • Community annotation for 5WXH at PDBWiki (http://pdbwiki.org)

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