5XMY Transcription date May 16, 2017
title Crystal Structure Of Taf3 Phd Finger Bound To H3k4me3q5ser
authors S.Zhao, B.Zhang, H.Li
compound source
Molecule: Transcription Initiation Factor Tfiid Subunit 3
Chain: A, C
Fragment: Phd Finger, Unp Residues 853-915
Synonym: 140 Kda Tata Box-Binding Protein-Associated Factor Associated Factor 3,Transcription Initiation Factor Tfiid 1 Subunit,Tafii140;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Taf3
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Psumoh10

Molecule: Histone Peptide H3(1-15)K4me3q5ser
Chain: P, D
Fragment: H3 Peptide 1-15
Engineered: Yes
Mutation: Yes

Synthetic: Yes
Organism_scientific: Synthetic Construct
Organism_taxid: 32630
Other_details: Chemically Synthesized H3k4me3 Peptide
symmetry Space Group: P 1 21 1
R_factor 0.182 R_Free 0.221
crystal
cell
length a length b length c angle alpha angle beta angle gamma
26.982 48.096 52.700 90.00 98.16 90.00
method X-Ray Diffractionresolution 1.70 Å
ligand M3L, ZN enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (55 Kb) [Save to disk]
  • Biological Unit Coordinates (5xmy.pdb1.gz) 26 Kb
  • Biological Unit Coordinates (5xmy.pdb2.gz) 25 Kb
  • LPC: Ligand-Protein Contacts for 5XMY
  • CSU: Contacts of Structural Units for 5XMY
  • Structure Factors (204 Kb)
  • Retrieve 5XMY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XMY from S2C, [Save to disk]
  • View 5XMY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XMY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xmy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xmy_P] [5xmy_C] [5xmy_D] [5xmy_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XMY
  • Community annotation for 5XMY at PDBWiki (http://pdbwiki.org)

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