5XTS Sugar Binding Protein date Jun 20, 2017
title Crystal Structure Of The Cysr-Ctld3 Fragment Of Human Mr At Basicneutral Ph
authors Y.He, Z.Hu
compound source
Molecule: Macrophage Mannose Receptor 1
Chain: A
Fragment: Unp Residues 22-629
Synonym: Mmr,C-Type Lectin Domain Family 13 Member D,C-Type Domain Family 13 Member D-Like,Human Mannose Receptor,Hmr,M Mannose Receptor 1-Like Protein 1;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mrc1, Clec13d, Clec13dl, Mrc1l1
Expression_system: Trichoplusia Ni
Expression_system_taxid: 7111
symmetry Space Group: P 21 21 21
R_factor 0.166 R_Free 0.201
crystal
cell
length a length b length c angle alpha angle beta angle gamma
60.256 101.697 123.464 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand CA enzyme
Primary referenceStructural Insights into the pH-Dependent Conformational Change and Collagen Recognition of the Human Mannose Receptor., Hu Z, Shi X, Yu B, Li N, Huang Y, He Y, Structure. 2017 Dec 6. pii: S0969-2126(17)30359-3. doi:, 10.1016/j.str.2017.11.006. PMID:29225077
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (159 Kb) [Save to disk]
  • Biological Unit Coordinates (5xts.pdb1.gz) 153 Kb
  • LPC: Ligand-Protein Contacts for 5XTS
  • CSU: Contacts of Structural Units for 5XTS
  • Structure Factors (301 Kb)
  • Retrieve 5XTS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XTS from S2C, [Save to disk]
  • View 5XTS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XTS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xts from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xts_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XTS
  • Community annotation for 5XTS at PDBWiki (http://pdbwiki.org)

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