5XUY Protein Binding date Jun 26, 2017
title Crystal Structure Of Atg101-Atg13horma
authors B.W.Kim, H.K.Song
compound source
Molecule: Autophagy-Related Protein 13
Chain: A, C
Fragment: Unp Residues 1-190
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg13, Kiaa0652
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Autophagy-Related Protein 101
Chain: B, D
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg101, C12orf44, Pp894
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.237 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
87.990 125.177 100.760 90.00 102.08 90.00
method X-Ray Diffractionresolution 2.20 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Primary referenceThe C-terminal region of ATG101 bridges ULK1 and PtdIns3K complex in autophagy initiation., Kim BW, Jin Y, Kim J, Kim JH, Jung J, Kang S, Kim IY, Kim J, Cheong H, Song HK, Autophagy. 2018;14(12):2104-2116. doi: 10.1080/15548627.2018.1504716. Epub 2018, Aug 16. PMID:30081750
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (263 Kb) [Save to disk]
  • Biological Unit Coordinates (5xuy.pdb1.gz) 127 Kb
  • Biological Unit Coordinates (5xuy.pdb2.gz) 133 Kb
  • CSU: Contacts of Structural Units for 5XUY
  • Structure Factors (1083 Kb)
  • Retrieve 5XUY in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XUY from S2C, [Save to disk]
  • View 5XUY in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XUY
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xuy from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xuy_A] [5xuy_D] [5xuy_C] [5xuy_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XUY
  • Community annotation for 5XUY at PDBWiki (http://pdbwiki.org)

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