5XV1 Protein Binding date Jun 26, 2017
title Crystal Structure Of Atg101-Atg13horma
authors B.W.Kim, H.K.Song
compound source
Molecule: Autophagy-Related Protein 13
Chain: A, C
Fragment: Unp Residues 1-190
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg13, Kiaa0652
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Autophagy-Related Protein 101
Chain: B, D
Engineered: Yes
Mutation: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Atg101, C12orf44, Pp894
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 1 2 1
R_factor 0.211 R_Free 0.251
crystal
cell
length a length b length c angle alpha angle beta angle gamma
88.483 125.505 101.038 90.00 101.66 90.00
method X-Ray Diffractionresolution 2.51 Å
Gene
Ontology
ChainFunctionProcessComponent
A, C


D, B


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (272 Kb) [Save to disk]
  • Biological Unit Coordinates (5xv1.pdb1.gz) 131 Kb
  • Biological Unit Coordinates (5xv1.pdb2.gz) 133 Kb
  • CSU: Contacts of Structural Units for 5XV1
  • Structure Factors (589 Kb)
  • Retrieve 5XV1 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XV1 from S2C, [Save to disk]
  • View 5XV1 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XV1
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xv1 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xv1_A] [5xv1_D] [5xv1_C] [5xv1_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XV1
  • Community annotation for 5XV1 at PDBWiki (http://pdbwiki.org)

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