5XWR Transcription date Jun 30, 2017
title Crystal Structure Of Rbbp4-Peptide Complex
authors C.Jobichen, B.H.Lui, G.T.Daniel, J.Sivaraman
compound source
Molecule: Histone-Binding Protein Rbbp4
Chain: A, B
Synonym: Chromatin Assembly Factor 1 Subunit C,Caf-1 Subuni Chromatin Assembly Factor I P48 Subunit,Caf-I P48,Nucleosom Remodeling Factor Subunit Rbap48,Retinoblastoma-Binding Pro Rbbp-4,Retinoblastoma-Binding Protein P48;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp4, Rbap48
Expression_system: Autographa Californica Nucleopolyhedrovi
Expression_system_taxid: 46015

Molecule: Met-Ser-Arg-Arg-Lys-Gln-Ala-Lys-Pro-Gln-His-Ile
Chain: C, D
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.192 R_Free 0.256
length a length b length c angle alpha angle beta angle gamma
73.840 59.860 101.529 90.00 93.70 90.00
method X-Ray Diffractionresolution 2.69 Å
A, B

Primary referenceTargeting cancer addiction for SALL4 by shifting its transcriptome with a pharmacologic peptide., Liu BH, Jobichen C, Chia CSB, Chan THM, Tang JP, Chung TXY, Li J, Poulsen A, Hung AW, Koh-Stenta X, Tan YS, Verma CS, Tan HK, Wu CS, Li F, Hill J, Joy J, Yang H, Chai L, Sivaraman J, Tenen DG, Proc Natl Acad Sci U S A. 2018 Jul 5. pii: 1801253115. doi:, 10.1073/pnas.1801253115. PMID:29976840
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (254 Kb) [Save to disk]
  • Biological Unit Coordinates (5xwr.pdb1.gz) 248 Kb
  • CSU: Contacts of Structural Units for 5XWR
  • Structure Factors (532 Kb)
  • Retrieve 5XWR in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5XWR from S2C, [Save to disk]
  • View 5XWR in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5XWR
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5xwr from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5xwr_B] [5xwr_D] [5xwr_A] [5xwr_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5XWR
  • Community annotation for 5XWR at PDBWiki (http://pdbwiki.org)

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