5Y0U Metal Binding Protein date Jul 18, 2017
title The Solution Structure Of Aebp2 C2h2 Zinc Fingers
authors A.Sun, Y.Shi, J.Wu
compound source
Molecule: Zinc Finger Protein Aebp2
Chain: A
Fragment: Unp Residues 258-357
Synonym: Adipocyte Enhancer-Binding Protein 2,Ae-Binding Pr
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Aebp2
Expression_system: Escherichia Coli 'Bl21-Gold(De3)Plyss Ag
Expression_system_taxid: 866768
Expression_system_strain: Bl21-Gold(De3)Plyss Ag
Expression_system_vector_type: Plasmid
Expression_system_plasmid: P28
methodSolution NMR
ligand ZN enzyme
Primary referenceStructural and biochemical insights into human zinc finger protein AEBP2 reveals interactions with RBBP4., Sun A, Li F, Liu Z, Jiang Y, Zhang J, Wu J, Shi Y, Protein Cell. 2018 Aug;9(8):738-742. doi: 10.1007/s13238-017-0483-6. PMID:29134516
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (546 Kb) [Save to disk]
  • Biological Unit Coordinates (5y0u.pdb1.gz) 28 Kb
  • LPC: Ligand-Protein Contacts for 5Y0U
  • CSU: Contacts of Structural Units for 5Y0U
  • Original NMR restraints for 5Y0U from PDB
  • Retrieve 5Y0U in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5Y0U from S2C, [Save to disk]
  • View 5Y0U in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5Y0U
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5y0u from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5y0u_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5Y0U
  • Community annotation for 5Y0U at PDBWiki (http://pdbwiki.org)

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