5YGS Apoptosis date Sep 26, 2017
title Human Tnfrsf25 Death Domain
authors X.Yin, T.Jin
compound source
Molecule: Human Tnrsf25 Death Domain
Chain: A, B, C, D
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
symmetry Space Group: P 1 21 1
R_factor 0.190 R_Free 0.213
length a length b length c angle alpha angle beta angle gamma
73.690 153.550 98.240 90.00 90.17 90.00
method X-Ray Diffractionresolution 2.69 Å
ligand GLC, SO4 enzyme
A, D, C, B
  • carbohydrate transmembrane t...

  • Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (875 Kb) [Save to disk]
  • Biological Unit Coordinates (5ygs.pdb1.gz) 219 Kb
  • Biological Unit Coordinates (5ygs.pdb2.gz) 219 Kb
  • Biological Unit Coordinates (5ygs.pdb3.gz) 221 Kb
  • Biological Unit Coordinates (5ygs.pdb4.gz) 219 Kb
  • LPC: Ligand-Protein Contacts for 5YGS
  • CSU: Contacts of Structural Units for 5YGS
  • Structure Factors (1305 Kb)
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  • SEQRES to COORDINATES correlation for 5YGS from S2C, [Save to disk]
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  • Visual 3D analysis of 5YGS
  • Cartoon representation from PDB Cartoon
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  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5ygs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5ygs_B] [5ygs_D] [5ygs_A] [5ygs_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YGS
  • Community annotation for 5YGS at PDBWiki (http://pdbwiki.org)

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