5YPM		date
authors
compound		source
symmetry		R_factor R_Free
crystal cell	length a length b length c angle alpha angle beta angle gamma
method	X-Ray Diffraction	resolution
ligand	8YL, SO4, ZN	enzyme
Gene Ontology	Chain Function Process Component D, B, C, A, F, E, H, G
Primary reference	The mechanism of NDM-1-catalyzed carbapenem hydrolysis is distinct from that of penicillin or cephalosporin hydrolysis., Feng H, Liu X, Wang S, Fleming J, Wang DC, Liu W, Nat Commun. 2017 Dec 21;8(1):2242. doi: 10.1038/s41467-017-02339-w. PMID:29269938

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (595 Kb) [Save to disk] Biological Unit Coordinates (5ypm.pdb1.gz) 77 Kb Biological Unit Coordinates (5ypm.pdb2.gz) 78 Kb Biological Unit Coordinates (5ypm.pdb3.gz) 77 Kb Biological Unit Coordinates (5ypm.pdb4.gz) 77 Kb Biological Unit Coordinates (5ypm.pdb5.gz) 78 Kb Biological Unit Coordinates (5ypm.pdb6.gz) 77 Kb Biological Unit Coordinates (5ypm.pdb7.gz) 78 Kb Biological Unit Coordinates (5ypm.pdb8.gz) 77 Kb LPC: Ligand-Protein Contacts for 5YPM CSU: Contacts of Structural Units for 5YPM Structure Factors (926 Kb) Retrieve 5YPM in mmCIF format [Save to disk] SEQRES to COORDINATES correlation for 5YPM from S2C, [Save to disk]

View 5YPM in 3D

Proteopedia, because life has more than 2D. On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure. On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [5ypm_A] [5ypm_B] [5ypm_C] [5ypm_D] [5ypm_E] [5ypm_F] [5ypm_G] [5ypm_H] SWISS-PROT database:

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