5YXH Signaling Protein date Dec 05, 2017
title Structure Of Rheb-Gdp
authors S.J.Mahoney
compound source
Molecule: Gtp-Binding Protein Rheb
Chain: A, B, C, D
Synonym: Ras Homolog Enriched In Brain
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rheb, Rheb2
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.244 R_Free 0.299
length a length b length c angle alpha angle beta angle gamma
50.166 58.963 64.345 110.53 90.03 108.16
method X-Ray Diffractionresolution 2.04 Å
ligand GDP, MG enzyme
A, D, C, B

Primary referenceA small molecule inhibitor of Rheb selectively targets mTORC1 signaling., Mahoney SJ, Narayan S, Molz L, Berstler LA, Kang SA, Vlasuk GP, Saiah E, Nat Commun. 2018 Feb 7;9(1):548. doi: 10.1038/s41467-018-03035-z. PMID:29416044
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (115 Kb) [Save to disk]
  • Biological Unit Coordinates (5yxh.pdb1.gz) 30 Kb
  • Biological Unit Coordinates (5yxh.pdb2.gz) 29 Kb
  • Biological Unit Coordinates (5yxh.pdb3.gz) 28 Kb
  • Biological Unit Coordinates (5yxh.pdb4.gz) 30 Kb
  • LPC: Ligand-Protein Contacts for 5YXH
  • CSU: Contacts of Structural Units for 5YXH
  • Structure Factors (1119 Kb)
  • Retrieve 5YXH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5YXH from S2C, [Save to disk]
  • View 5YXH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5YXH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5yxh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5yxh_A] [5yxh_C] [5yxh_D] [5yxh_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5YXH
  • Community annotation for 5YXH at PDBWiki (http://pdbwiki.org)

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