5ZCS Gene Regulation date Feb 20, 2018
title 4.9 Angstrom Cryo-Em Structure Of Human Mtor Complex 2
authors X.Chen, M.Liu, Y.Tian, H.Wang, J.Wang, Y.Xu
compound source
Molecule: Serinethreonine-Protein Kinase Mtor
Chain: A, B
Synonym: Fk506-Binding Protein 12-Rapamycin Complex-Associa Protein 1,Fkbp12-Rapamycin Complex-Associated Protein,Mamma Target Of Rapamycin,Mtor,Mechanistic Target Of Rapamycin,Ra And Fkbp12 Target 1,Rapamycin Target Protein 1;
Ec: 2.7.11.1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mtor, Frap, Frap1, Frap2, Raft1, Rapt1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293f

Molecule: Target Of Rapamycin Complex Subunit Lst8
Chain: C, D
Synonym: Torc Subunit Lst8,G Protein Beta Subunit-Like,Prot Gbetal,Mammalian Lethal With Sec13 Protein 8,Mlst8;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mlst8, Gbl, Lst8
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293f

Molecule: Rapamycin-Insensitive Companion Of Mtor
Chain: E, F
Synonym: Avo3 Homolog,Havo3
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rictor, Kiaa1999
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293f

Molecule: Target Of Rapamycin Complex 2 Subunit Mapkap1
Chain: G, H
Synonym: Sin:Stress-Activated Map Kinase-Interacting Protei Subunit Mapkap1,Mitogen-Activated Protein Kinase 2-Associat 1,Stress-Activated Map Kinase-Interacting Protein 1,Msin1;
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mapkap1, Mip1, Sin1
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: 293f
symmetry Space Group: P 1
R_factor
R_Free
crystal
cell
length a length b length c angle alpha angle beta angle gamma
1.000 1.000 1.000 90.00 90.00 90.00
method Electron Microscopyresolution 4.90 Å
ligand
enzyme Transferase E.C.2.7.11.1 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


D, C
  • protein serine/threonine kin...


  • F, E


    Primary referenceCryo-EM structure of human mTOR complex 2., Chen X, Liu M, Tian Y, Li J, Qi Y, Zhao D, Wu Z, Huang M, Wong CCL, Wang HW, Wang J, Yang H, Xu Y, Cell Res. 2018 Mar 22. pii: 10.1038/s41422-018-0029-3. doi:, 10.1038/s41422-018-0029-3. PMID:29567957
    Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (920 Kb) [Save to disk]
  • Biological Unit Coordinates (5zcs.pdb1.gz) 892 Kb
  • CSU: Contacts of Structural Units for 5ZCS
  • Retrieve 5ZCS in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZCS from S2C, [Save to disk]
  • View 5ZCS in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZCS
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zcs from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zcs_C] [5zcs_E] [5zcs_F] [5zcs_B] [5zcs_D] [5zcs_A] [5zcs_G] [5zcs_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZCS
  • Community annotation for 5ZCS at PDBWiki (http://pdbwiki.org)

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