5ZGG Membrane Protein date Mar 08, 2018
title Nmr Structure Of P75ntr Transmembrane Domain In Complex With
authors Z.Lin, C.Ibanez
compound source
Molecule: Tumor Necrosis Factor Receptor Superfamily Member
Chain: A, B
Synonym: P75ntr Tmd, Gp80-Lngfr,Low Affinity Neurotrophin R P75ntr,Low-Affinity Nerve Growth Factor Receptor,Ngf Recept Icd;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ngfr, Tnfrsf16
Expression_system: Escherichia Coli
Expression_system_taxid: 562
Expression_system_strain: Solubl21
methodSolution NMR
ligand 9F6 enzyme
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (188 Kb) [Save to disk]
  • Biological Unit Coordinates (5zgg.pdb1.gz) 19 Kb
  • LPC: Ligand-Protein Contacts for 5ZGG
  • CSU: Contacts of Structural Units for 5ZGG
  • Original NMR restraints for 5ZGG from PDB
  • Retrieve 5ZGG in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZGG from S2C, [Save to disk]
  • View 5ZGG in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZGG
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zgg from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zgg_A] [5zgg_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZGG
  • Community annotation for 5ZGG at PDBWiki (http://pdbwiki.org)

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