5ZLQ Metal Binding Protein date Mar 29, 2018
title Crystal Structure Of C1orf123
authors Y.Furukawa, C.T.Lim, T.Tosha
compound source
Molecule: Upf0587 Protein C1orf123
Chain: A
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: C1orf123
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet15b
symmetry Space Group: I 2 3
R_factor 0.180 R_Free 0.233
length a length b length c angle alpha angle beta angle gamma
118.131 118.131 118.131 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand ZN enzyme

Primary referenceIdentification of a novel zinc-binding protein, C1orf123, as an interactor with a heavy metal-associated domain., Furukawa Y, Lim C, Tosha T, Yoshida K, Hagai T, Akiyama S, Watanabe S, Nakagome K, Shiro Y, PLoS One. 2018 Sep 27;13(9):e0204355. doi: 10.1371/journal.pone.0204355., eCollection 2018. PMID:30260988
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (34 Kb) [Save to disk]
  • Biological Unit Coordinates (5zlq.pdb1.gz) 29 Kb
  • LPC: Ligand-Protein Contacts for 5ZLQ
  • CSU: Contacts of Structural Units for 5ZLQ
  • Structure Factors (519 Kb)
  • Retrieve 5ZLQ in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZLQ from S2C, [Save to disk]
  • View 5ZLQ in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZLQ
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zlq from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zlq_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZLQ
  • Community annotation for 5ZLQ at PDBWiki (http://pdbwiki.org)

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