5ZUN Hydrolase Inhibitor date May 08, 2018
title Crystal Structure Of Human Monoacylglycerol Lipase In Comple Compound 3l
authors S.Sogabe, Y.Zama, W.Lane, G.Snell
compound source
Molecule: Monoglyceride Lipase
Chain: A
Synonym: Mgl,Hu-K5,Lysophospholipase Homolog,Lysophospholip Monoacylglycerol Lipase,Magl;
Engineered: Yes
Mutation: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Mgll
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: C 2 2 21
R_factor 0.147 R_Free 0.160
length a length b length c angle alpha angle beta angle gamma
95.149 127.224 60.250 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.35 Å
ligand 9JX, CL, EDO, PG4 enzyme Hydrolase E.C. BRENDA

Primary referenceDesign, synthesis, and evaluation of piperazinyl pyrrolidin-2-ones as a novel series of reversible monoacylglycerol lipase inhibitors., Aida J, Fushimi M, Kusumoto T, Sugiyama H, Arimura N, Ikeda S, Sasaki M, Sogabe S, Aoyama K, Koike T, J Med Chem. 2018 Sep 25. doi: 10.1021/acs.jmedchem.8b00824. PMID:30251836
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (107 Kb) [Save to disk]
  • Biological Unit Coordinates (5zun.pdb1.gz) 102 Kb
  • LPC: Ligand-Protein Contacts for 5ZUN
  • CSU: Contacts of Structural Units for 5ZUN
  • Structure Factors (1951 Kb)
  • Retrieve 5ZUN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZUN from S2C, [Save to disk]
  • View 5ZUN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZUN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zun from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zun_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZUN
  • Community annotation for 5ZUN at PDBWiki (http://pdbwiki.org)

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