5ZZ3 Signaling Protein date May 30, 2018
title Crystal Structure Of Intracellular B30.2 Domain Of Btn3a3
authors Y.Y.Yang, X.Li, W.D.Liu, C.C.Chen, R.T.Guo, Y.H.Zhang
compound source
Molecule: Butyrophilin, Subfamily 3, Member A3 Isoform B Va
Chain: A
Fragment: Unp Residues 24-280
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21(De3)
Expression_system_vector_type: Plasmid
Expression_system_plasmid: Pet28a
symmetry Space Group: P 43 21 2
R_factor 0.195 R_Free 0.275
crystal
cell
length a length b length c angle alpha angle beta angle gamma
50.308 50.308 261.093 90.00 90.00 90.00
method X-Ray Diffractionresolution 3.00 Å
Primary referenceA Structural Change in Butyrophilin upon Phosphoantigen Binding Underlies Phosphoantigen-Mediated Vgamma9Vdelta2 T Cell Activation., Yang Y, Li L, Yuan L, Zhou X, Duan J, Xiao H, Cai N, Han S, Ma X, Liu W, Chen CC, Wang L, Li X, Chen J, Kang N, Chen J, Shen Z, Malwal SR, Liu W, Shi Y, Oldfield E, Guo RT, Zhang Y, Immunity. 2019 Mar 14. pii: S1074-7613(19)30083-4. doi:, 10.1016/j.immuni.2019.02.016. PMID:30902636
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (38 Kb) [Save to disk]
  • Biological Unit Coordinates (5zz3.pdb1.gz) 33 Kb
  • CSU: Contacts of Structural Units for 5ZZ3
  • Structure Factors (68 Kb)
  • Retrieve 5ZZ3 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5ZZ3 from S2C, [Save to disk]
  • View 5ZZ3 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5ZZ3
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5zz3 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5zz3_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5ZZ3
  • Community annotation for 5ZZ3 at PDBWiki (http://pdbwiki.org)

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