5MZX Lyase date Feb 02, 2017
title Crystal Structure Of The Decarboxylase Aibaaibb In Complex Diphospho Pantetheine
authors T.Bock, E.Luxenburger, J.Hoffmann, V.Schuetza, C.Feiler, R.Muelle W.Blankenfeldt
compound source
Molecule: Glutaconate Coa-Transferase Family, Subunit A
Chain: A, C
Engineered: Yes
Mutation: Yes
Organism_scientific: Myxococcus Xanthus (Strain Dk 1622)
Organism_taxid: 246197
Strain: Dk 1622
Gene: Mxan_4264
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Glutaconate Coa-Transferase Family, Subunit B
Chain: D, B
Engineered: Yes
Mutation: Yes

Organism_scientific: Myxococcus Xanthus (Strain Dk 1622)
Organism_taxid: 246197
Strain: Dk 1622
Gene: Mxan_4265
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.164 R_Free 0.197
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.546 93.392 90.044 90.00 103.93 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand 4PS, ACT, GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, D, C, B


Primary referenceAibA/AibB Induces an Intramolecular Decarboxylation in Isovalerate Biosynthesis by Myxococcus xanthus., Bock T, Luxenburger E, Hoffmann J, Schutza V, Feiler C, Muller R, Blankenfeldt W, Angew Chem Int Ed Engl. 2017 Aug 7;56(33):9986-9989. doi: 10.1002/anie.201701992., Epub 2017 May 16. PMID:28508504
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (311 Kb) [Save to disk]
  • Biological Unit Coordinates (5mzx.pdb1.gz) 305 Kb
  • LPC: Ligand-Protein Contacts for 5MZX
  • CSU: Contacts of Structural Units for 5MZX
  • Structure Factors (697 Kb)
  • Retrieve 5MZX in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 5MZX from S2C, [Save to disk]
  • Re-refined 5mzx structure from PDB_REDO, a databank with updated and optimised macromolecular X-ray diffraction structure models
  • View 5MZX in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 5MZX
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Electron Density related parameters from EDS Electron Density Server, at Upsala
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 5mzx from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [5mzx_A] [5mzx_B] [5mzx_D] [5mzx_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 5MZX
  • Community annotation for 5MZX at PDBWiki (http://pdbwiki.org)

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