6ACN Lyase(Carbon-Oxygen) date Jan 16, 1990
title Structure Of Activated Aconitase. Formation Of The (4fe-4s) The Crystal
authors A.H.Robbins, C.D.Stout
compound source
Molecule: Aconitase
Chain: A
Ec: 4.2.1.3
Engineered: Yes
Organism_scientific: Sus Scrofa
Organism_common: Pig
Organism_taxid: 9823
symmetry Space Group: P 21 21 2
R_factor 0.187 R_Free NULL
crystal
cell
length a length b length c angle alpha angle beta angle gamma
173.600 72.000 72.700 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.50 Å
ligand PCA, SF4, SO4, TRC enzyme Lyase E.C.4.2.1.3 BRENDA
related structures by homologous chain: 1B0K, 1B0M
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceStructure of activated aconitase: formation of the [4Fe-4S] cluster in the crystal., Robbins AH, Stout CD, Proc Natl Acad Sci U S A 1989 May;86(10):3639-43. PMID:2726740
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (132 Kb) [Save to disk]
  • Biological Unit Coordinates (6acn.pdb1.gz) 126 Kb
  • LPC: Ligand-Protein Contacts for 6ACN
  • CSU: Contacts of Structural Units for 6ACN
  • Likely Quarternary Molecular Structure file(s) for 6ACN
  • Retrieve 6ACN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ACN from S2C, [Save to disk]
  • View 6ACN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ACN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • 3D motif for 6ACN, from MSDmotif at EBI
  • Genome occurence of 6ACN's fold from GeneCensus
  • Classification of representative domains in scop (Structural Classification of Proteins)
        - Domain d6acn_2, region 1-528 [Jmol] [rasmolscript] [script source]
        - Domain d6acn_1, region 529-754 [Jmol] [rasmolscript] [script source]
  • Fold representative 6acn from FSSP and Dali (Families of Structurally Similar Proteins)
  • Class (fold), Architecture (subfold), Topology, Homologous superfamily from CATH
  • Summaries and structural analyses of PDB data files from PDBSum
  • Identification of Protein Pockets & Cavities at CASTp
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6acn] [6acn_A]
  • SWISS-PROT database: [P16276]
  • Domain organization of [ACON_PIG] by SWISSPFAM
  • Other resources with information on 6ACN
  • Community annotation for 6ACN at PDBWiki (http://pdbwiki.org)
  • MMDB (Entrez's Structure Database)
  • Movements, Movies and Images
  • Images from IMB Jena Image Library of Biological Macromolecules.

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