6AKK Protein Binding date Sep 02, 2018
title Crystal Structure Of The Second Coiled-Coil Domain Of Sike1
authors L.Zhou, M.Chen, Z.C.Zhou
compound source
Molecule: Suppressor Of Ikbke 1
Chain: A, B
Synonym: Suppressor Of Ikk-Epsilon
Engineered: Yes
 Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sike1, Sike
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_variant: Codonplus
symmetry Space Group: C 2 2 21
R_factor 0.246 R_Free 0.267
crystal
cell
length a length b length c angle alpha angle beta angle gamma
42.797 110.871 46.438 90.00 90.00 90.00
method X-Ray Diffractionresolution 1.50 Å
ligand GOL enzyme
Primary referenceArchitecture, substructures, and dynamic assembly of STRIPAK complexes in Hippo signaling., Tang Y, Chen M, Zhou L, Ma J, Li Y, Zhang H, Shi Z, Xu Q, Zhang X, Gao Z, Zhao Y, Cheng Y, Jiao S, Zhou Z, Cell Discov. 2019 Jan 8;5:3. doi: 10.1038/s41421-018-0077-3. eCollection 2019. PMID:30622739
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (40 Kb) [Save to disk]
  • Biological Unit Coordinates (6akk.pdb1.gz) 69 Kb
  • LPC: Ligand-Protein Contacts for 6AKK
  • CSU: Contacts of Structural Units for 6AKK
  • Structure Factors (340 Kb)
  • Retrieve 6AKK in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AKK from S2C, [Save to disk]
    • View 6AKK in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
    • Visual 3D analysis of 6AKK
  • Ramachandran plot from PDBSum
    • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
    • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6akk_A] [6akk_B]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
    • Other resources with information on 6AKK
  • Community annotation for 6AKK at PDBWiki (http://pdbwiki.org)

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