6AKM Protein Binding date Sep 02, 2018
title Crystal Structure Of Slmap-Sike1 Complex
authors J.Ma, M.Chen, Z.C.Zhou
compound source
Molecule: Suppressor Of Ikbke 1
Chain: A
Synonym: Suppressor Of Ikk-Epsilon
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Sike1, Sike
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_variant: Codonplus

Molecule: Sarcolemmal Membrane-Associated Protein
Chain: B
Synonym: Sarcolemmal-Associated Protein
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Slmap, Kiaa1601, Slap, Unq1847pro3577
Expression_system: Escherichia Coli Bl21(De3)
Expression_system_taxid: 469008
Expression_system_strain: Bl21 (De3)
Expression_system_variant: Codonplus
symmetry Space Group: P 32 2 1
R_factor 0.204 R_Free 0.238
crystal
cell
length a length b length c angle alpha angle beta angle gamma
66.763 66.763 61.353 90.00 90.00 120.00
method X-Ray Diffractionresolution 2.30 Å
ligand GOL enzyme
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceArchitecture, substructures, and dynamic assembly of STRIPAK complexes in Hippo signaling., Tang Y, Chen M, Zhou L, Ma J, Li Y, Zhang H, Shi Z, Xu Q, Zhang X, Gao Z, Zhao Y, Cheng Y, Jiao S, Zhou Z, Cell Discov. 2019 Jan 8;5:3. doi: 10.1038/s41421-018-0077-3. eCollection 2019. PMID:30622739
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (37 Kb) [Save to disk]
  • Biological Unit Coordinates (6akm.pdb1.gz) 64 Kb
  • LPC: Ligand-Protein Contacts for 6AKM
  • CSU: Contacts of Structural Units for 6AKM
  • Structure Factors (223 Kb)
  • Retrieve 6AKM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6AKM from S2C, [Save to disk]
  • View 6AKM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6AKM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6akm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6akm_B] [6akm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6AKM
  • Community annotation for 6AKM at PDBWiki (http://pdbwiki.org)

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