OCA Atlas for 6APL

6APL

date

authors

compound

source

symmetry

R_factor

R_Free

crystal
cell

length a	length b	length c	angle alpha	angle beta	angle gamma

method

X-Ray Diffraction

resolution

ligand

C5P, MSE, NAG

enzyme

Gene
Ontology

Chain	Function	Process	Component
F, A, E, B, D, C

Primary reference

Expression system for structural and functional studies of human glycosylation enzymes., Moremen KW, Ramiah A, Stuart M, Steel J, Meng L, Forouhar F, Moniz HA, Gahlay G, Gao Z, Chapla D, Wang S, Yang JY, Prabhakar PK, Johnson R, Rosa MD, Geisler C, Nairn AV, Seetharaman J, Wu SC, Tong L, Gilbert HJ, LaBaer J, Jarvis DL, Nat Chem Biol. 2017 Dec 18. pii: nchembio.2539. doi: 10.1038/nchembio.2539. PMID:29251719

Data retrieval

Asymmetric unit, PDB entry: [header only] [complete with coordinates] (617 Kb) [Save to disk]

Biological Unit Coordinates (6apl.pdb1.gz) 104 Kb

Biological Unit Coordinates (6apl.pdb2.gz) 107 Kb

Biological Unit Coordinates (6apl.pdb3.gz) 109 Kb

Biological Unit Coordinates (6apl.pdb4.gz) 109 Kb

Biological Unit Coordinates (6apl.pdb5.gz) 102 Kb

Biological Unit Coordinates (6apl.pdb6.gz) 101 Kb

LPC: Ligand-Protein Contacts for 6APL

CSU: Contacts of Structural Units for 6APL

Structure Factors (906 Kb)

Retrieve 6APL in mmCIF format [Save to disk]

SEQRES to COORDINATES correlation for 6APL from S2C, [Save to disk]

View 6APL in 3D

Proteopedia, because life has more than 2D.

On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.

On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.

Structure-derived information

Dipole moment, from Dipole Server at Weizmann Institute

Sequence-derived information

View one-letter amino acid or nucleotide sequence for each chain: [6apl_F] [6apl_A] [6apl_B] [6apl_C] [6apl_D] [6apl_E]

SWISS-PROT database:

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