6ATU Toxin date Aug 29, 2017
title Exploring Cystine Dense Peptide Space To Open A Unique Molec Toolbox
authors M.M.Gewe, P.Rupert, R.K.Strong
compound source
Molecule: Elafin
Chain: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R
Synonym: Elastase-Specific Inhibitor,Esi,Peptidase Inhibito Protease Inhibitor Wap3,Skin-Derived Antileukoproteinase,Sk Four-Disulfide Core Domain Protein 14;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Pi3, Wap3, Wfdc14
Expression_system: Homo Sapiens
Expression_system_taxid: 9606
Expression_system_cell_line: Hek-293f
symmetry Space Group: P 41
R_factor 0.196 R_Free 0.248
crystal
cell
length a length b length c angle alpha angle beta angle gamma
71.333 71.333 214.444 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.40 Å
Gene
Ontology
ChainFunctionProcessComponent
F, N, K, E, Q, M, C, L, A, J, O, P, B, H, D, R, I, G


Primary referenceScreening, large-scale production and structure-based classification of cystine-dense peptides., Correnti CE, Gewe MM, Mehlin C, Bandaranayake AD, Johnsen WA, Rupert PB, Brusniak MY, Clarke M, Burke SE, De Van Der Schueren W, Pilat K, Turnbaugh SM, May D, Watson A, Chan MK, Bahl CD, Olson JM, Strong RK, Nat Struct Mol Biol. 2018 Mar;25(3):270-278. doi: 10.1038/s41594-018-0033-9. Epub, 2018 Feb 26. PMID:29483648
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (140 Kb) [Save to disk]
  • Biological Unit Coordinates (6atu.pdb1.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb2.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb3.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb4.gz) 9 Kb
  • Biological Unit Coordinates (6atu.pdb5.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb6.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb7.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb8.gz) 10 Kb
  • Biological Unit Coordinates (6atu.pdb9.gz) 10 Kb
  • CSU: Contacts of Structural Units for 6ATU
  • Structure Factors (1209 Kb)
  • Retrieve 6ATU in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6ATU from S2C, [Save to disk]
  • View 6ATU in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6ATU
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6atu_G] [6atu_E] [6atu_F] [6atu_Q] [6atu_B] [6atu_P] [6atu_M] [6atu_N] [6atu_D] [6atu_J] [6atu_A] [6atu_R] [6atu_I] [6atu_K] [6atu_O] [6atu_L] [6atu_C] [6atu_H]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6ATU
  • Community annotation for 6ATU at PDBWiki (http://pdbwiki.org)

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