6B77 Blood Clotting date Oct 03, 2017
title Structures Of The Two-Chain Human Plasma Factor Xiia Co-Crys With Potent Inhibitors
authors A.A.Dementiev, A.Silva, C.Yee, M.T.Flavin, J.R.Partridge
compound source
Molecule: Coagulation Factor Xii
Chain: A
Fragment: Unp Residues 354-362
Synonym: Hageman Factor,Haf
Ec: 3.4.21.38
Other_details: Activated Factor Xiia Part 1
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606

Molecule: Coagulation Factor Xii
Chain: B
Fragment: Unp Residues 373-615
Synonym: Hageman Factor,Haf
Ec: 3.4.21.38
Other_details: Activated Factor Xiia Light Chain

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: I 41
R_factor 0.174 R_Free 0.218
crystal
cell
length a length b length c angle alpha angle beta angle gamma
79.402 79.402 122.246 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.37 Å
ligand CWV, GOL, IOD, NAG, SO4 enzyme Hydrolase E.C.3.4.21.38 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
B


Primary referenceStructures of human plasma beta-factor XIIa cocrystallized with potent inhibitors., Dementiev A, Silva A, Yee C, Li Z, Flavin MT, Sham H, Partridge JR, Blood Adv. 2018 Mar 13;2(5):549-558. doi: 10.1182/bloodadvances.2018016337. PMID:29519898
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (47 Kb) [Save to disk]
  • Biological Unit Coordinates (6b77.pdb1.gz) 42 Kb
  • LPC: Ligand-Protein Contacts for 6B77
  • CSU: Contacts of Structural Units for 6B77
  • Structure Factors (133 Kb)
  • Retrieve 6B77 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6B77 from S2C, [Save to disk]
  • View 6B77 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6B77
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6b77 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6b77_B] [6b77_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6B77
  • Community annotation for 6B77 at PDBWiki (http://pdbwiki.org)

  • You may enter another PDB ID code
    Go [Back], to the [PDB Lite page], to the [OCA Search page] or to the [PDB Home page]
    OCA© by Jaime Prilusky, 1996-2014
    Bioinformatics Unit
    Weizmann Institute of Science