6BA5 Immune System date Oct 12, 2017
title Potent And Selective Antitumor Activity Of A T-Cell Engaging Bispecific Antibody Targeting A Membrane-Proximal Epitope O
authors H.Park, C.Rader
compound source
Molecule: Variable Domain Of Light Chain, Antibody R11
Chain: A, C, E, G
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Variable Domain Heavy Chain, Antibody R11
Chain: B, D, F, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inactive Tyrosine-Protein Kinase Transmembrane Re Ror1;
Chain: M, N, O, P
Synonym: Neurotrophic Tyrosine Kinase,Receptor-Related 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ror1, Ntrkr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1
R_factor 0.194 R_Free 0.214
crystal
cell
length a length b length c angle alpha angle beta angle gamma
58.020 73.900 84.120 89.86 71.30 84.49
method X-Ray Diffractionresolution 1.62 Å
Primary referencePotent and selective antitumor activity of a T cell-engaging bispecific antibody targeting a membrane-proximal epitope of ROR1., Qi J, Li X, Peng H, Cook EM, Dadashian EL, Wiestner A, Park H, Rader C, Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5467-E5476. doi:, 10.1073/pnas.1719905115. Epub 2018 May 29. PMID:29844189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (411 Kb) [Save to disk]
  • Biological Unit Coordinates (6ba5.pdb1.gz) 104 Kb
  • Biological Unit Coordinates (6ba5.pdb2.gz) 104 Kb
  • Biological Unit Coordinates (6ba5.pdb3.gz) 105 Kb
  • Biological Unit Coordinates (6ba5.pdb4.gz) 104 Kb
  • CSU: Contacts of Structural Units for 6BA5
  • Structure Factors (5565 Kb)
  • Retrieve 6BA5 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BA5 from S2C, [Save to disk]
  • View 6BA5 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BA5
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ba5 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ba5_P] [6ba5_A] [6ba5_H] [6ba5_N] [6ba5_F] [6ba5_O] [6ba5_G] [6ba5_D] [6ba5_M] [6ba5_E] [6ba5_B] [6ba5_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BA5
  • Community annotation for 6BA5 at PDBWiki (http://pdbwiki.org)

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