6BAN Immune System date Oct 14, 2017
title Potent And Selective Antitumor Activity Of A T-Cell Engaging Bispecific Antibody Targeting A Membrane-Proximal Epitope O
authors H.Park, C.Rader
compound source
Molecule: Variable Domain Of R11 Light Chain
Chain: A, C, E, G
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Variable Domain R11 Heavy Chain
Chain: B, D, F, H
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_taxid: 9606
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Inactive Tyrosine-Protein Kinase Transmembrane Re Ror1;
Chain: M, N, O, P
Synonym: Neurotrophic Tyrosine Kinase,Receptor-Related 1
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Ror1, Ntrkr1
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 1 21 1
R_factor 0.160 R_Free 0.196
crystal
cell
length a length b length c angle alpha angle beta angle gamma
86.790 84.360 102.740 90.00 113.88 90.00
method X-Ray Diffractionresolution 1.95 Å
Primary referencePotent and selective antitumor activity of a T cell-engaging bispecific antibody targeting a membrane-proximal epitope of ROR1., Qi J, Li X, Peng H, Cook EM, Dadashian EL, Wiestner A, Park H, Rader C, Proc Natl Acad Sci U S A. 2018 Jun 12;115(24):E5467-E5476. doi:, 10.1073/pnas.1719905115. Epub 2018 May 29. PMID:29844189
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (417 Kb) [Save to disk]
  • Biological Unit Coordinates (6ban.pdb1.gz) 106 Kb
  • Biological Unit Coordinates (6ban.pdb2.gz) 106 Kb
  • Biological Unit Coordinates (6ban.pdb3.gz) 106 Kb
  • Biological Unit Coordinates (6ban.pdb4.gz) 106 Kb
  • CSU: Contacts of Structural Units for 6BAN
  • Structure Factors (3437 Kb)
  • Retrieve 6BAN in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BAN from S2C, [Save to disk]
  • View 6BAN in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BAN
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6ban from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6ban_A] [6ban_P] [6ban_M] [6ban_N] [6ban_H] [6ban_E] [6ban_G] [6ban_D] [6ban_F] [6ban_B] [6ban_O] [6ban_C]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BAN
  • Community annotation for 6BAN at PDBWiki (http://pdbwiki.org)

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