6BNH Transcription Oxidoreductase date Nov 16, 2017
title Solution Nmr Structures Of Brd4 Et Domain With Jmjd6 Peptide
authors T.Konuma, D.Yu, C.Zhao, Y.Ju, R.Sharma, C.Ren, Q.Zhang, M.M.Zhou, L
compound source
Molecule: Bromodomain-Containing Protein 4
Chain: A
Fragment: Et Domain Residues 601-683
Synonym: Protein Hunk1
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Brd4, Hunk1
Expression_system: Escherichia Coli
Expression_system_taxid: 562

Molecule: Bifunctional Arginine Demethylase And Lysyl-Hydro Jmjd6;
Chain: B
Fragment: Residues 84-96
Synonym: Histone Arginine Demethylase Jmjd6,Jmjc Domain-Con Protein 6,Jumonji Domain-Containing Protein 6,Lysyl-Hydroxy Jmjd6,Peptide-Lysine 5-Dioxygenase Jmjd6,Phosphatidylserine Protein Ptdsr;
Ec: 1.14.11.-
Engineered: Yes

Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Jmjd6, Kiaa0585, Ptdsr
Expression_system: Escherichia Coli
Expression_system_taxid: 562
methodSolution NMR
ligand
enzyme Oxidoreductase E.C.1.14.11 BRENDA
Primary referenceStructural Mechanism of the Oxygenase JMJD6 Recognition by the Extraterminal (ET) Domain of BRD4., Konuma T, Yu D, Zhao C, Ju Y, Sharma R, Ren C, Zhang Q, Zhou MM, Zeng L, Sci Rep. 2017 Nov 24;7(1):16272. doi: 10.1038/s41598-017-16588-8. PMID:29176719
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (553 Kb) [Save to disk]
  • Biological Unit Coordinates (6bnh.pdb1.gz) 28 Kb
  • CSU: Contacts of Structural Units for 6BNH
  • Original NMR restraints for 6BNH from PDB
  • Retrieve 6BNH in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BNH from S2C, [Save to disk]
  • View 6BNH in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BNH
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bnh from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bnh_B] [6bnh_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BNH
  • Community annotation for 6BNH at PDBWiki (http://pdbwiki.org)

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