6BSM Hydrolase Hydrolase Inhibitor date Dec 04, 2017
title Bmp1 Complexed With A Reverse Hydroxamate - Compound 4
authors R.Gampe, L.Shewchuk
compound source
Molecule: Bone Morphogenetic Protein 1
Chain: A
Synonym: Bmp-1,Mammalian Tolloid Protein,Mtld,Procollagen C Proteinase,Pcp;
Ec: 3.4.24.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp1, Pcolc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 3
R_factor 0.192 R_Free 0.225
crystal
cell
length a length b length c angle alpha angle beta angle gamma
101.789 101.789 101.789 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.33 Å
ligand ACE, E7D, ZN enzyme Hydrolase E.C.3.4.24.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A


Primary referenceReverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1., Kallander LS, Washburn D, Hilfiker MA, Eidam HS, Lawhorn BG, Prendergast J, Fox R, Dowdell S, Manns S, Hoang T, Zhao S, Ye G, Hammond M, Holt DA, Roethke T, Hong X, Reid RA, Gampe R, Zhang H, Diaz E, Rendina AR, Quinn AM, Willette B, ACS Med Chem Lett. 2018 Jul 2;9(7):736-740. doi: 10.1021/acsmedchemlett.8b00173. , eCollection 2018 Jul 12. PMID:30034610
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (75 Kb) [Save to disk]
  • Biological Unit Coordinates (6bsm.pdb1.gz) 70 Kb
  • LPC: Ligand-Protein Contacts for 6BSM
  • CSU: Contacts of Structural Units for 6BSM
  • Structure Factors (432 Kb)
  • Retrieve 6BSM in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BSM from S2C, [Save to disk]
  • View 6BSM in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BSM
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bsm from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bsm_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BSM
  • Community annotation for 6BSM at PDBWiki (http://pdbwiki.org)

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