6BTO Hydrolase date Dec 07, 2017
title Bmp1 Complexed With (2~{S})-2-[[(1~{R},3~{S},4~{S})-2-[(2~{R (Oxidanylamino)-2-Oxidanylidene-Ethyl]Heptanoyl]-2- Azabicyclo[2.2.1]Heptan-3-Yl]Carbonylamino]-2-Phenyl-Ethano
authors R.Gampe, L.Shewchuk
compound source
Molecule: Bone Morphogenetic Protein 1
Chain: A, B
Fragment: Residues 121-321
Synonym: Bmp-1,Mammalian Tolloid Protein,Mtld,Procollagen C Proteinase,Pcp;
Ec: 3.4.24.19
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Bmp1, Pcolc
Expression_system: Escherichia Coli
Expression_system_taxid: 562
symmetry Space Group: P 21 21 21
R_factor 0.208 R_Free 0.245
crystal
cell
length a length b length c angle alpha angle beta angle gamma
90.291 124.643 43.776 90.00 90.00 90.00
method X-Ray Diffractionresolution 2.05 Å
ligand E8P, EDO, SCN, ZN enzyme Hydrolase E.C.3.4.24.19 BRENDA
Gene
Ontology
ChainFunctionProcessComponent
A, B


Primary referenceReverse Hydroxamate Inhibitors of Bone Morphogenetic Protein 1., Kallander LS, Washburn D, Hilfiker MA, Eidam HS, Lawhorn BG, Prendergast J, Fox R, Dowdell S, Manns S, Hoang T, Zhao S, Ye G, Hammond M, Holt DA, Roethke T, Hong X, Reid RA, Gampe R, Zhang H, Diaz E, Rendina AR, Quinn AM, Willette B, ACS Med Chem Lett. 2018 Jul 2;9(7):736-740. doi: 10.1021/acsmedchemlett.8b00173. , eCollection 2018 Jul 12. PMID:30034610
Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (145 Kb) [Save to disk]
  • Biological Unit Coordinates (6bto.pdb1.gz) 71 Kb
  • Biological Unit Coordinates (6bto.pdb2.gz) 71 Kb
  • LPC: Ligand-Protein Contacts for 6BTO
  • CSU: Contacts of Structural Units for 6BTO
  • Structure Factors (889 Kb)
  • Retrieve 6BTO in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BTO from S2C, [Save to disk]
  • View 6BTO in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BTO
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bto from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bto_B] [6bto_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BTO
  • Community annotation for 6BTO at PDBWiki (http://pdbwiki.org)

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