6BW4 Gene Regulation date Dec 14, 2017
title Crystal Structure Of Rbbp4 In Complex With Prdm16 N-Terminal
authors D.Ivanochko, L.Halabelian, A.Hutchinson, A.Seitova, C.Bountra, A.M.Edwards, C.H.Arrowsmith, Structural Genomics Consortium (
compound source
Molecule: Histone-Binding Protein Rbbp4
Chain: C, A
Synonym: Chromatin Assembly Factor 1 Subunit C,Caf-1 Subuni Chromatin Assembly Factor I P48 Subunit,Caf-I P48,Nucleosom Remodeling Factor Subunit Rbap48,Retinoblastoma-Binding Pro Rbbp-4,Retinoblastoma-Binding Protein P48;
Engineered: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
Gene: Rbbp4, Rbap48
Expression_system: Spodoptera Frugiperda
Expression_system_common: Fall Armyworm
Expression_system_taxid: 7108

Molecule: Pr Domain Zinc Finger Protein 16
Chain: B, D
Fragment: N-Terminal Residues 1-12
Synonym: Pr Domain-Containing Protein 16,Transcription Fact Mds1evi1-Like Gene 1;
Engineered: Yes

Synthetic: Yes
Organism_scientific: Homo Sapiens
Organism_common: Human
Organism_taxid: 9606
symmetry Space Group: P 1 21 1
R_factor 0.199 R_Free 0.233
crystal
cell
length a length b length c angle alpha angle beta angle gamma
76.034 59.862 101.843 90.00 94.55 90.00
method X-Ray Diffractionresolution 2.00 Å
ligand UNX enzyme
Gene
Ontology
ChainFunctionProcessComponent
A, C


Data retrieval
  • Asymmetric unit, PDB entry: [header only] [complete with coordinates] (256 Kb) [Save to disk]
  • Biological Unit Coordinates (6bw4.pdb1.gz) 126 Kb
  • Biological Unit Coordinates (6bw4.pdb2.gz) 127 Kb
  • LPC: Ligand-Protein Contacts for 6BW4
  • CSU: Contacts of Structural Units for 6BW4
  • Structure Factors (2501 Kb)
  • Retrieve 6BW4 in mmCIF format [Save to disk]
  • SEQRES to COORDINATES correlation for 6BW4 from S2C, [Save to disk]
  • View 6BW4 in 3D
  • Proteopedia, because life has more than 2D.
  • On Jmol, a nice Rasmol like molecule viewer. This is good for easiest viewing of basic structure.
  • On FirstGlance, an excellent tool for a guided tour on the structure components, by E. Martz.
  • Visual 3D analysis of 6BW4
  • Cartoon representation from PDB Cartoon
  • Ramachandran plot from PDBSum
  • Structure-derived information
  • Dipole moment, from Dipole Server at Weizmann Institute
  • Crystal Contacts, from CryCo at Weizmann Institute
  • Fold representative 6bw4 from FSSP and Dali (Families of Structurally Similar Proteins)
  • Sequence-derived information
  • View one-letter amino acid or nucleotide sequence for each chain: [6bw4_D] [6bw4_C] [6bw4_B] [6bw4_A]
  • SWISS-PROT database:
  • Domain organization of by SWISSPFAM
  • Other resources with information on 6BW4
  • Community annotation for 6BW4 at PDBWiki (http://pdbwiki.org)

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